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Biotechnology Information protein blast program
Protein Blast Program, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/protein+blast+program/blast+protein/pm41787356-56-25-21
Average 86 stars, based on 1 article reviews
protein blast program - by Bioz Stars, 2026-11
86/100 stars

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other:

Article Title: Ancient lineages of the keratin-associated protein (KRTAP) genes and their co- option in the evolution of the hair follicle
Article Snippet: Methods And De nitions Searches for similarity among the KRTAPs themselves and between other proteins were performed using the protein BLAST (Basic Local Alignment Search Tool) program of the NCBI (National Center for Biotechnology Information of the National Library of Medicine): https://blast.ncbi.nlm.nih.gov/Blast.cgi with the following search parameters: Max target sequences 1000, Expect threshold 200000, Word size 2, Max matches in a query range 0, Matrix BLOSUM62, Gap Costs Existence: 11 Extension: 1, No compositional adjustments, No Low complexity regions lter.

Article Title: Vitellogenin-derived fragment in embryos of Japanese flounder Paralichthys olivaceus with binding and bactericidal activities against an infectious bacterium via an interaction with saccharides.
Article Snippet: The homology search was performed with protein blast program in the National Center for Biotechnology Information (https://blast.ncbi.nl m.nih.gov/Blast.cgi).

Article Title: Transcription factor PpWRKY13 targets a cell wall modification gene in peach to regulate fruit softening.
Article Snippet: Additionally, other WRKY members, PaWRKY40 (XP_021821871.1) of Prunus avium and PmWRKY40 (XP_008228795.1) of Prunus mume, were downloaded from National Center for Biotechnology Information using the protein blast program (https://blast.ncbi.nlm.nih.gov/Blast.cgi).

Article Title: Purification and Characterization of a Major Extracellular Chitinase from a Biocontrol Bacterium, Paenibacillus elgii HOA73
Article Snippet: Putative conserved domains were detected using protein blast program of National Center for Biotechnology Information (NCBI; http://blast.ncbi.nlm.nih.gov/Blast.cgi).

Sequencing:

Article Title: The C‐terminal segment of collagenase in Grimontia hollisae binds collagen to enhance collagenolysis
Article Snippet: .. Sequence similarity searches between PPC domains within the C‐terminal segment from G. hollisae and other bacterial collagenases were performed using the protein blast program of the National Center for Biotechnology Information, and multiple sequence alignment analysis was performed using the clustal omega program . ..

Article Title: Characteristics of the polymeric immunoglobulin receptor (pIgR) of commercial grass carp and the immune response of pIgR and immunoglobulin to Flavobacterium columnare
Article Snippet: The transcytosis of polymeric immunoglobulins is primarily regulated by the polymeric immunoglobulin (pIg) receptor (pIgR), which can activate the host immune system and protect against pathogen invasion.. To improve understanding of the immune defense of teleost fish, in this study for the first time the full-length complementary DNA (cDNA) sequence of the pIgR in grass carp Ctenopharyngodon idellus was cloned and characterized; its messenger RNA (mRNA) expression and molecular functions were also investigated.. We determined that the complete sequence of the pIgR cDNA has 1640 nucleotides, which includes a 1011-base pair (bp) open reading frame, a 68-bp 5′ untranslated region (UTR), and a 561-bp 3′ UTR.

Comparison:

Article Title: Why the lower reported prevalence of asthma in patients diagnosed with COVID-19 validates repurposing EDTA solutions to prevent and manage treat COVID-19 disease
Article Snippet: .. An amino acid comparison of the two relevant amino acid regions in S protein of SARS-CoV-1 representing fusion loop 1 (FL1 = Amino Acids 798–819) and fusion loop 2 (FL2 = Amino Acids 835–855) was conducted using the Protein Blast program from the National Center for Biotechnology Information . ..

Article Title: Genetic Effects and Expression Patterns of the Nitrate Transporter (NRT) Gene Family in Populus tomentosa
Article Snippet: .. The identified PtoNRT protein sequences were uploaded to the National Center for Biotechnology Information (NCBI) Protein BLAST program (blastp ) for comparison against the Arabidopsis genome using the UniProtKB/Swiss-Prot database. ..



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